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Adaptation to Complex Environments
Agroforestry Ecology
Behavioural Ecology and Conservation
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Cilia in Development and Disease
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Computational Biology and Population Genomics
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Extracellular Matrix in Development and Disease
Freshwater and Invasion Biology
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Local Adaptation in Drosophila
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Research Group
André Conceição Pereira
Artur Bastos Lourenço
Beatriz Gameiro Ramos
Daniela Pinto
Inês Bica Mendes
Manuel Carmo Gomes
Martim Afonso Geraldes
Mónica V. Cunha
Patrícia Pereira Lopes
Team Member
All Publications
65 Publications
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Latest
Research Paper
Population structure and history of Mycobacterium bovis European 3 clonal complex reveal transmission across ecological corridors of unrecognised importance in Portugal
2024
Research Paper
Rescue of Mycobacterium bovis DNA obtained from cultured strains during official surveillance of animal TB: key steps for robust whole genome sequence data generation
2024
Research Paper
Systematic SARS-CoV-2 S Gene Sequencing in Wastewater Samples Enables Early Lineage Detection and Uncovers Rare Mutations in Portugal
2024
Research Paper
Building a Portuguese Coalition for Biodiversity Genomics
2024
Research Paper
Widespread circulation and transmission risk of Mycobacterium avium subsp. paratuberculosis at the livestock-wildlife-environment interface in a Mediterranean agro-forestry farmstead
2024
Research Paper
The historical ecological background of West Nile virus in Portugal indicates One Health opportunities
2024
Research Paper
Detection of Dengue and Chikungunya viruses in wastewater in Portugal: an exploratory surveillance
2024
Research Paper
Mapping high-risk areas for Mycobacterium tuberculosis complex bacteria transmission: Linking host space use and environmental contamination
2024
Research Paper
Phylogenetic analysis of Mycobacterium caprae highlights past and present epidemiological links at the Iberian Peninsula scale
2024
Research Paper
Metagenomic profiling of raw wastewater in Portugal highlights microbiota and resistome signatures of public health interest beyond the usual suspects
2024
Research Paper
Host-, Environment-, or Human-Related Effects Drive Interspecies Interactions in an Animal Tuberculosis Multi-Host Community Depending on the Host and Season
2024
Research Paper
The mobilome of Staphylococcus aureus from wild ungulates reveals epidemiological links at the animal-human interface
2024
Research Paper
Genomic epidemiology of Staphylococcus aureus from the Iberian Peninsula highlights the expansion of livestock associated-CC398 towards wildlife
2024
Research Paper
First time whole genome sequencing of Mycobacterium bovis from the environment supports transmission at the animal-environment interface.
2024
Research Paper
Flow Cytometry Coupled with Resuscitation Assays As a High-Resolution Tool to Inform Environmental Management and Disinfection of Settings Affected by Tuberculous Mycobacteria
2024
Research Paper
Controlling the pandemic during the SARS-CoV-2 vaccination rollout
2024
Research Paper
Cellular and Enzymatic Determinants Impacting the Exolytic Action of an Anti-Staphylococcal Enzybiotic
2023
Research Paper
Genomic epidemiology sheds light on the emergence and spread of Mycobacterium bovis Eu2 Clonal Complex in Portugal
2023
Research Paper
Unlocking environmental contamination of animal tuberculosis hotspots with viable mycobacteria at the intersection of flow cytometry, PCR, and ecological modelling
2023
Preprints
Wastewater-based surveillance for tracing the circulation of Dengue and Chikungunya viruses
2023
Research Paper
Disentangling wildlife-cattle interactions in multi-host tuberculosis scenarios: systematic review and meta-analysis
2023
Research Paper
Exploring the correlations between epi indicators of COVID-19 and the concentration of pharmaceutical compounds in wastewater treatment plants in Northern Portugal
2023
Research Paper
How genomics can help biodiversity conservation
2023
Research Paper
Stability of hybrid versus vaccine immunity against BA.5 infection over 8 months
2023
Research Paper
Stalking Mycobacterium bovis in the total environment: FLOW-FISH & FACS to detect, quantify, and sort metabolically active and quiescent cells in complex matrices
2022
Research Paper
Antimicrobial resistance in commensal Staphylococcus aureus from wild ungulates is driven by agricultural land cover and livestock farming
2022
Research Paper
A high-risk carbapenem-resistant Pseudomonas aeruginosa clone detected in red deer (Cervus elaphus ) from Portugal
2022
Research Paper
A Walk on the wild side: Wild ungulates as potential reservoirs of multi-drug resistant bacteria and genes, including Escherichia coli harbouring CTX-M beta-lactamases
2022
Research Paper
A wastewater-based epidemiology tool for COVID-19 surveillance in Portugal.
2022
Research Paper
Discrimination and surveillance of infectious severe acute respiratory syndrome Coronavirus 2 in wastewater using cell culture and RT-qPCR
2022
Research Paper
Recovery of SARS-CoV-2 from large volumes of raw wastewater is enhanced with the inuvai R180 system
2022
Research Paper
When FLOW-FISH met FACS: Combining multiparametric, dynamic approaches for microbial single-cell research in the total environment
2022
Research Paper
Worldwide Disseminated IncX4 Plasmid Carrying mcr-1 Arrives to Wild Mammal in Portugal
2022
Research Paper
The era of reference genomes in conservation genomics
2022
Research Paper
Knowledge, attitudes, and practices of municipal veterinary practitioners towards echinococcosis
2022
Research Paper
Enterotoxin- and Antibiotic-Resistance-Encoding Genes Are Present in Both Coagulase-Positive and Coagulase-Negative Foodborne Staphylococcus Strains
2022
Research Paper
Risk of BA.5 Infection among Persons Exposed to Previous SARS-CoV-2 Variants
2022
Research Paper
Global trends of epidemiological research in livestock tuberculosis for the last four decades
2021
Research Paper
The hard numbers of tuberculosis epidemiology in wildlife: A meta‐regression and systematic review
2021
Research Paper
Association between reproduction and immunity in Herpestes ichneumon is sex-biased and unaffected by body condition
2021
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