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48 Publications

Research Paper
Building a Portuguese Coalition for Biodiversity Genomics

2024

Research Paper
Widespread circulation and transmission risk of Mycobacterium avium subsp. paratuberculosis at the livestock-wildlife-environment interface in a Mediterranean agro-forestry farmstead

2024

Research Paper
Population structure and history of Mycobacterium bovis European 3 clonal complex reveal transmission across ecological corridors of unrecognised importance in Portugal

2024

Research Paper
Rescue of Mycobacterium bovis DNA obtained from cultured strains during official surveillance of animal TB: key steps for robust whole genome sequence data generation

2024

Research Paper
Systematic SARS-CoV-2 S Gene Sequencing in Wastewater Samples Enables Early Lineage Detection and Uncovers Rare Mutations in Portugal

2024

Research Paper
The historical ecological background of West Nile virus in Portugal indicates One Health opportunities

2024

Research Paper
Detection of Dengue and Chikungunya viruses in wastewater in Portugal: an exploratory surveillance

2024

Research Paper
Mapping high-risk areas for Mycobacterium tuberculosis complex bacteria transmission: Linking host space use and environmental contamination

2024

Research Paper
Phylogenetic analysis of Mycobacterium caprae highlights past and present epidemiological links at the Iberian Peninsula scale

2024

Research Paper
Metagenomic profiling of raw wastewater in Portugal highlights microbiota and resistome signatures of public health interest beyond the usual suspects

2024

Research Paper
Host-, Environment-, or Human-Related Effects Drive Interspecies Interactions in an Animal Tuberculosis Multi-Host Community Depending on the Host and Season

2024

Research Paper
The mobilome of Staphylococcus aureus from wild ungulates reveals epidemiological links at the animal-human interface

2024

Research Paper
Genomic epidemiology of Staphylococcus aureus from the Iberian Peninsula highlights the expansion of livestock associated-CC398 towards wildlife

2024

Research Paper
First time whole genome sequencing of Mycobacterium bovis from the environment supports transmission at the animal-environment interface.

2024

Research Paper
Flow Cytometry Coupled with Resuscitation Assays As a High-Resolution Tool to Inform Environmental Management and Disinfection of Settings Affected by Tuberculous Mycobacteria

2024

Research Paper
Disentangling wildlife-cattle interactions in multi-host tuberculosis scenarios: systematic review and meta-analysis

2023

Preprints
Wastewater-based surveillance for tracing the circulation of Dengue and Chikungunya viruses

2023

Research Paper
Exploring the correlations between epi indicators of COVID-19 and the concentration of pharmaceutical compounds in wastewater treatment plants in Northern Portugal

2023

Research Paper
How genomics can help biodiversity conservation

2023

Research Paper
Unlocking environmental contamination of animal tuberculosis hotspots with viable mycobacteria at the intersection of flow cytometry, PCR, and ecological modelling

2023

Research Paper
Genomic epidemiology sheds light on the emergence and spread of Mycobacterium bovis Eu2 Clonal Complex in Portugal

2023

Research Paper
A high-risk carbapenem-resistant Pseudomonas aeruginosa clone detected in red deer (Cervus elaphus ) from Portugal

2022

Research Paper
A Walk on the wild side: Wild ungulates as potential reservoirs of multi-drug resistant bacteria and genes, including Escherichia coli harbouring CTX-M beta-lactamases

2022

Research Paper
A wastewater-based epidemiology tool for COVID-19 surveillance in Portugal.

2022

Research Paper
Discrimination and surveillance of infectious severe acute respiratory syndrome Coronavirus 2 in wastewater using cell culture and RT-qPCR

2022

Research Paper
Recovery of SARS-CoV-2 from large volumes of raw wastewater is enhanced with the inuvai R180 system

2022

Research Paper
When FLOW-FISH met FACS: Combining multiparametric, dynamic approaches for microbial single-cell research in the total environment

2022

Research Paper
Worldwide Disseminated IncX4 Plasmid Carrying mcr-1 Arrives to Wild Mammal in Portugal

2022

Research Paper
The era of reference genomes in conservation genomics

2022

Research Paper
Knowledge, attitudes, and practices of municipal veterinary practitioners towards echinococcosis

2022

Research Paper
Stalking Mycobacterium bovis in the total environment: FLOW-FISH & FACS to detect, quantify, and sort metabolically active and quiescent cells in complex matrices

2022

Research Paper
Antimicrobial resistance in commensal Staphylococcus aureus from wild ungulates is driven by agricultural land cover and livestock farming

2022

Research Paper
Enterotoxin- and Antibiotic-Resistance-Encoding Genes Are Present in Both Coagulase-Positive and Coagulase-Negative Foodborne Staphylococcus Strains

2022

Research Paper
Association between reproduction and immunity in Herpestes ichneumon is sex-biased and unaffected by body condition

2021

Research Paper
Emergence and Spread of Cephalosporinases in Wildlife: A Review

2021

Research Paper
Emergence of colistin resistance genes (mcr-1) in Escherichia coli among widely distributed wild ungulates

2021

Research Paper
Temporal and geographical research trends of antimicrobial resistance in wildlife - A bibliometric analysis

2021

Research Paper
Mapping the scientific knowledge of antimicrobial resistance in food-producing animals

2021

Research Paper
Egyptian Mongoose (Herpestes ichneumon) Gut Microbiota: Taxonomical and Functional Differences across Sex and Age Classes

2020

Research Paper
Wild boar as a reservoir of antimicrobial resistance

2020